Package: rwicc 0.1.3.9000

rwicc: Regression with Interval-Censored Covariates

Provides functions to simulate and analyze data for a regression model with an interval censored covariate, as described in Morrison et al. (2021) <doi:10.1111/biom.13472>.

Authors:Douglas Ezra Morrison [aut, cre, cph], Ron Brookmeyer [aut]

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rwicc.pdf |rwicc.html✨
rwicc/json (API)
NEWS

# Install 'rwicc' in R:

install.packages('rwicc', repos = c('https://d-morrison.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/d-morrison/rwicc/issues

On CRAN:

2.70 score 1 stars 3 scripts 167 downloads 7 exports 88 dependencies

Last updated 1 years agofrom:7020507746. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	FAIL	Oct 30 2024
R-4.5-win	WARNING	Oct 30 2024
R-4.5-linux	WARNING	Oct 30 2024
R-4.4-win	WARNING	Oct 30 2024
R-4.4-mac	WARNING	Oct 30 2024
R-4.3-win	WARNING	Oct 30 2024
R-4.3-mac	WARNING	Oct 30 2024

Exports:fit_joint_model fit_midpoint_model fit_uniform_model plot_CDF plot_censoring_data plot_phi_curves simulate_interval_censoring

Dependencies:abind arm askpass base64enc biglm boot bslib cachem cli coda codetools colorspace cpp11 crayon crosstalk curl data.table DBI digest dplyr evaluate fansi farver fastmap fontawesome fs generics ggplot2 ggrepel glue gtable highr htmltools htmlwidgets httr isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle lme4 lobstr lubridate magrittr MASS Matrix memoise mgcv mime minqa munsell nlme nloptr openssl pillar pkgconfig plotly prettyunits promises pryr purrr R6 rappdirs RColorBrewer Rcpp RcppEigen rlang rmarkdown sass scales stringi stringr sys tibble tidyr tidyselect timechange tinytex utf8 vctrs viridisLite withr xfun yaml

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
convert a pair of simple logistic regression coefficients into P(Y\|T) curve:	build_phi_function_from_coefs
compute mean window period duration from simple logistic regression coefficients	compute_mu
Fit a logistic regression model with an interval-censored covariate	fit_joint_model
Fit model using midpoint imputation	fit_midpoint_model
Fit model using uniform imputation	fit_uniform_model
plot estimated and true CDFs for seroconversion date distribution	plot_CDF
Title	plot_censoring_data
Plot true and estimated curves for P(Y=1\|T=t)	plot_phi_curves
rwicc: Regression with Interval-Censored Covariates	rwicc
Inverse survival function for time-to-event variable with linear hazard function	seroconversion_inverse_survival_function
Simulate a dataset with interval-censored seroconversion dates	simulate_interval_censoring